PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01091.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 469aa    MW: 52648.6 Da    PI: 4.4375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01091.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.52.4e-31581921128
                      NAM   1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                              lp+G++F+P+d e++++ L+k+ + g +    ++  e+i++v+    i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r+
  Rsa1.0_01091.1_g00003.1  58 LPRGVKFDPSDPEIIWHLLAKSgLLGLSshpfID--EFIPTVNqddgICYTHPKNLP-GVKQDGTVSHFFHRAIKAYSTGTRKRRK 140
                              799************9999988544444443422..33544433345**********.677888999******************8 PP

                      NAM  78 tk.....sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              ++     + +W++tg++k+v+  +g + g+kk++v+y g+a    kt+Wvmh+y+l
  Rsa1.0_01091.1_g00003.1 141 IHdddfgDVRWHKTGRTKPVVL-DGVQRGCKKIMVLYGGKAV---KTNWVMHQYHL 192
                              6555655889************.99************76665...6********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-3743211IPR003441NAC domain
PROSITE profilePS5100530.84958211IPR003441NAC domain
PfamPF023652.1E-1259192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAGRSWLVDS NRIATKIKSA SGQHDPHQVV WNSNPTKHCP NCHHVIDNND EVDDWPGLPR  60
GVKFDPSDPE IIWHLLAKSG LLGLSSHPFI DEFIPTVNQD DGICYTHPKN LPGVKQDGTV  120
SHFFHRAIKA YSTGTRKRRK IHDDDFGDVR WHKTGRTKPV VLDGVQRGCK KIMVLYGGKA  180
VKTNWVMHQY HLGTDEDEKD GDYVVSKIFY QQPQQILKQG GGDKGEQDVS DDIFAATTTT  240
PKSDPLTPKL FTPEPQQAVR LCSDSHFPDD YVAAPEVSLA EISEAVYMED EVQGVQRNHE  300
RTSSEDEPGP ETWIENRDNE IMVYDEEEKE NGKEDGNEQE DREKDENENQ AAAEEDGNDQ  360
DPNWFDSGGS QFILDSQQLV EHLSLCDDLL QVGSQDANNG GGSRNKQPCF GDYAHLGGSE  420
DFKRDLEDCQ KLVLDPSNID LDTPPEFRLS QLEFGSQESF LAWGTGKTD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115341.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK20.0NAC8_ARATH; NAC domain-containing protein 8
TrEMBLM4E7H80.0M4E7H8_BRARP; Uncharacterized protein
STRINGBra024733.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97072736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.10.0NAC family protein